IL_4W29_088

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

4W29|1|BA|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_088 not in the Motif Atlas

Geometric match to IL_3SUX_001

Geometric discrepancy: 0.3184

The information below is about IL_3SUX_001

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

4W29|1|BA|G|702
4W29|1|BA|U|703
*
4W29|1|BA|G|728
4W29|1|BA|G|729
4W29|1|BA|C|730

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2