IL_4W29_089

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_089 not in the Motif Atlas

Homologous match to IL_4WF9_024

Geometric discrepancy: 0.2208

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4W29|1|BA|U|703
4W29|1|BA|G|704
4W29|1|BA|A|705
4W29|1|BA|A|706
4W29|1|BA|G|707
*
4W29|1|BA|U|724
4W29|1|BA|G|725
4W29|1|BA|G|726
4W29|1|BA|A|727
4W29|1|BA|G|728

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2