IL_4W29_106

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

4W29|1|BA|U|1141|||A, 4W29|1|BA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_106 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1949

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4W29|1|BA|C|1018
4W29|1|BA|U|1019
4W29|1|BA|A|1020
4W29|1|BA|A|1021
4W29|1|BA|G|1022
4W29|1|BA|U|1023
4W29|1|BA|G|1024
*
4W29|1|BA|C|1140
4W29|1|BA|U|1141
4W29|1|BA|U|1141|||A
4W29|1|BA|A|1142
4W29|1|BA|A|1143
4W29|1|BA|G|1144

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BN

50S ribosomal protein L13