IL_4W29_116

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_116 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.1778

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4W29|1|BA|A|1262
4W29|1|BA|U|1263
4W29|1|BA|G|1264
4W29|1|BA|A|1265
4W29|1|BA|G|1266
4W29|1|BA|U|1267
4W29|1|BA|A|1268
4W29|1|BA|A|1269
*
4W29|1|BA|U|2011
4W29|1|BA|G|2012
4W29|1|BA|A|2013
4W29|1|BA|A|2014
4W29|1|BA|A|2015
4W29|1|BA|U|2016
4W29|1|BA|U|2017

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BF

50S ribosomal protein L4

Chain BW

50S ribosomal protein L22