3D structure

PDB id
4W29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
ACGA*UCUAU
Length
9 nucleotides
Bulged bases
4W29|1|BA|C|2055, 4W29|1|BA|C|2612, 4W29|1|BA|U|2613
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W29_147 not in the Motif Atlas
Homologous match to IL_7A0S_074
Geometric discrepancy: 0.4864
The information below is about IL_7A0S_074
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_70335.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

4W29|1|BA|A|2054
4W29|1|BA|C|2055
4W29|1|BA|G|2056
4W29|1|BA|A|2057
*
4W29|1|BA|U|2611
4W29|1|BA|C|2612
4W29|1|BA|U|2613
4W29|1|BA|A|2614
4W29|1|BA|U|2615

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain B5
50S ribosomal protein L32
Chain BE
50S ribosomal protein L3
Chain BW
50S ribosomal protein L22

Coloring options:


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