IL_4W29_155

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4W29|1|BA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_155 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.4164

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4W29|1|BA|C|2129
4W29|1|BA|U|2130
4W29|1|BA|G|2131
4W29|1|BA|U|2132
4W29|1|BA|G|2133
4W29|1|BA|A|2134
4W29|1|BA|A|2135
4W29|1|BA|C|2136
*
4W29|1|BA|G|2155
4W29|1|BA|G|2156
4W29|1|BA|G|2157
4W29|1|BA|A|2158
4W29|1|BA|G|2159

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L1