3D structure

PDB id
4W29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
CGAG*CGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W29_159 not in the Motif Atlas
Homologous match to IL_7RQB_089
Geometric discrepancy: 0.2267
The information below is about IL_7RQB_089
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.10
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
33

Unit IDs

4W29|1|BA|C|2350
4W29|1|BA|G|2351
4W29|1|BA|A|2352
4W29|1|BA|G|2353
*
4W29|1|BA|C|2364
4W29|1|BA|G|2365
4W29|1|BA|A|2366
4W29|1|BA|G|2367

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain B0
50S ribosomal protein L27
Chain B8
50S ribosomal protein L35

Coloring options:


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