IL_4W29_168

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

4W29|1|BA|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_168 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.2361

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

4W29|1|BA|U|2522
4W29|1|BA|G|2523
*
4W29|1|BA|C|2540
4W29|1|BA|A|2541
4W29|1|BA|A|2542
4W29|1|BA|G|2543

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36