IL_4W29_177

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGG*CGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_177 not in the Motif Atlas

Geometric match to IL_4WF9_107

Geometric discrepancy: 0.3562

The information below is about IL_4WF9_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31531.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

13

Unit IDs

4W29|1|BA|G|2843
4W29|1|BA|G|2844
4W29|1|BA|G|2845
*
4W29|1|BA|C|2871
4W29|1|BA|G|2872
4W29|1|BA|A|2873
4W29|1|BA|C|2874

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BR

50S ribosomal protein L17

Chain BT

50S ribosomal protein L19