IL_4W29_180

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUG*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_180 not in the Motif Atlas

Geometric match to IL_8VTW_082

Geometric discrepancy: 0.3031

The information below is about IL_8VTW_082

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4W29|1|BB|G|7
4W29|1|BB|U|8
4W29|1|BB|G|9
*
4W29|1|BB|U|111
4W29|1|BB|G|112
4W29|1|BB|C|113

Current chains

Chain BB

5S Ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BS

50S ribosomal protein L18