IL_4W29_208

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGAAGAAGC*GUGUAAAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_208 not in the Motif Atlas

Geometric match to IL_6CZR_129

Geometric discrepancy: 0.2565

The information below is about IL_6CZR_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58819.1

Basepair signature

cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4W29|1|CA|G|409
4W29|1|CA|G|410
4W29|1|CA|A|411
4W29|1|CA|A|412
4W29|1|CA|G|413
4W29|1|CA|A|414
4W29|1|CA|A|415
4W29|1|CA|G|416
4W29|1|CA|C|417
*
4W29|1|CA|G|426
4W29|1|CA|U|427
4W29|1|CA|G|428
4W29|1|CA|U|429
4W29|1|CA|A|430
4W29|1|CA|A|431
4W29|1|CA|A|432
4W29|1|CA|C|433

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S4