IL_4W29_216

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_216 not in the Motif Atlas

Geometric match to IL_4WF9_114

Geometric discrepancy: 0.3142

The information below is about IL_4WF9_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10810.1

Basepair signature

cWW-L-cWS-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4W29|1|CA|G|597
4W29|1|CA|U|598
4W29|1|CA|C|599
*
4W29|1|CA|G|639
4W29|1|CA|A|640
4W29|1|CA|U|641
4W29|1|CA|A|642
4W29|1|CA|C|643

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CH

30S ribosomal protein S8

Chain CQ

30S ribosomal protein S17