IL_4W29_239

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUCGU*ACGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUCGU,ACGAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_239 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3375

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4W29|1|CA|C|1069
4W29|1|CA|U|1070
4W29|1|CA|C|1071
4W29|1|CA|G|1072
4W29|1|CA|U|1073
*
4W29|1|CA|A|1102
4W29|1|CA|C|1103
4W29|1|CA|G|1104
4W29|1|CA|A|1105
4W29|1|CA|G|1106

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CC

30S ribosomal protein S3

Chain CE

30S ribosomal protein S5