IL_4W29_259

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_259 not in the Motif Atlas

Geometric match to IL_3RW6_004

Geometric discrepancy: 0.2208

The information below is about IL_3RW6_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

236

Unit IDs

4W29|1|CA|G|1435
4W29|1|CA|U|1436
4W29|1|CA|C|1437
*
4W29|1|CA|G|1464
4W29|1|CA|C|1465
4W29|1|CA|C|1466

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CT

30S ribosomal protein S20

Chain DT

50S ribosomal protein L19