IL_4W29_280

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGG*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_280 not in the Motif Atlas

Geometric match to IL_5E81_401

Geometric discrepancy: 0.3358

The information below is about IL_5E81_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

4W29|1|DA|C|537
4W29|1|DA|G|538
4W29|1|DA|G|539
*
4W29|1|DA|U|554
4W29|1|DA|U|555
4W29|1|DA|G|556

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DN

50S ribosomal protein L13

Chain DU

50S ribosomal protein L20