IL_4W29_285

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

4W29|1|DA|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_285 not in the Motif Atlas

Homologous match to IL_5J7L_261

Geometric discrepancy: 0.2354

The information below is about IL_5J7L_261

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4W29|1|DA|C|697
4W29|1|DA|C|698
*
4W29|1|DA|G|763
4W29|1|DA|A|764
4W29|1|DA|G|765

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L2