IL_4W29_292

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUG,CAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_292 not in the Motif Atlas

Homologous match to IL_7A0S_026

Geometric discrepancy: 0.3915

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

236

Unit IDs

4W29|1|DA|C|850
4W29|1|DA|U|851
4W29|1|DA|G|852
*
4W29|1|DA|C|925
4W29|1|DA|A|926
4W29|1|DA|G|928

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L30

Chain DB

5S ribosomal RNA; 5S rRNA