IL_4W29_311

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4W29|1|DA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_311 not in the Motif Atlas

Homologous match to IL_7RQB_044

Geometric discrepancy: 0.4188

The information below is about IL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W29|1|DA|G|1087
4W29|1|DA|A|1088
4W29|1|DA|G|1089
4W29|1|DA|U|1090
4W29|1|DA|G|1091
*
4W29|1|DA|C|1100
4W29|1|DA|U|1101
4W29|1|DA|C|1102

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D9

50S ribosomal protein L36

Chain DK

50S ribosomal protein L11