IL_4W29_315

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

4W29|1|DA|A|1219|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_315 not in the Motif Atlas

Homologous match to IL_7RQB_048

Geometric discrepancy: 0.2766

The information below is about IL_7RQB_048

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

4W29|1|DA|G|1219
4W29|1|DA|A|1219|||A
4W29|1|DA|C|1220
*
4W29|1|DA|G|1229
4W29|1|DA|C|1230

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DU

50S ribosomal protein L20

Chain DV

50S ribosomal protein L21