IL_4W29_360

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCGAG*CGAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_360 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3183

The information below is about IL_7A0S_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4W29|1|DA|G|2349
4W29|1|DA|C|2350
4W29|1|DA|G|2351
4W29|1|DA|A|2352
4W29|1|DA|G|2353
*
4W29|1|DA|C|2364
4W29|1|DA|G|2365
4W29|1|DA|A|2366
4W29|1|DA|G|2367
4W29|1|DA|C|2368

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L27

Chain D6

50S ribosomal protein L33

Chain D8

50S ribosomal protein L35