IL_4W29_361

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGU*AUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_361 not in the Motif Atlas

Geometric match to IL_7RQB_083

Geometric discrepancy: 0.2805

The information below is about IL_7RQB_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

4W29|1|DA|G|2396
4W29|1|DA|G|2397
4W29|1|DA|U|2398
*
4W29|1|DA|A|2418
4W29|1|DA|U|2419
4W29|1|DA|C|2420

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain D1

50S ribosomal protein L28

Chain D6

50S ribosomal protein L33

Chain D8

50S ribosomal protein L35

Chain DP

50S ribosomal protein L15