IL_4W29_370

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

4W29|1|DA|A|2572, 4W29|1|DA|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_370 not in the Motif Atlas

Homologous match to IL_7A0S_090

Geometric discrepancy: 0.1969

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

4W29|1|DA|C|2512
4W29|1|DA|G|2513
*
4W29|1|DA|C|2571
4W29|1|DA|A|2572
4W29|1|DA|C|2573
4W29|1|DA|G|2574

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CX

Transfer RNA; tRNA

Chain DE

50S ribosomal protein L3