IL_4W29_372

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_372 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.2071

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4W29|1|DA|G|2525
4W29|1|DA|G|2526
4W29|1|DA|C|2527
*
4W29|1|DA|G|2536
4W29|1|DA|U|2537
4W29|1|DA|C|2538

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D9

50S ribosomal protein L36

Chain DH

50S ribosomal protein L6