IL_4W29_403

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

4W29|1|BA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_403 not in the Motif Atlas

Homologous match to IL_9DFE_034

Geometric discrepancy: 0.2322

The information below is about IL_9DFE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61258.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

35

Unit IDs

4W29|1|BA|C|994
4W29|1|BA|C|995
4W29|1|BA|A|996
*
4W29|1|BA|U|1159
4W29|1|BA|G|1160

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L30

Chain BN

50S ribosomal protein L13

Chain BU

50S ribosomal protein L20

Chain BV

50S ribosomal protein L21