IL_4W29_405

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4W29|1|BA|C|1543|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_405 not in the Motif Atlas

Homologous match to IL_9DFE_062

Geometric discrepancy: 0.4322

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25943.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4W29|1|BA|G|1526
4W29|1|BA|G|1527
4W29|1|BA|A|1528
4W29|1|BA|A|1529
4W29|1|BA|G|1530
*
4W29|1|BA|U|1541
4W29|1|BA|G|1542
4W29|1|BA|A|1543
4W29|1|BA|C|1543|||A
4W29|1|BA|A|1544
4W29|1|BA|A|1545
4W29|1|BA|C|1546

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains