IL_4W29_407

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4W29|1|BA|A|1938, 4W29|1|BA|U|1944, 4W29|1|BA|U|1963

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_407 not in the Motif Atlas

Homologous match to IL_9DFE_077

Geometric discrepancy: 0.3297

The information below is about IL_9DFE_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4W29|1|BA|C|1934
4W29|1|BA|G|1935
4W29|1|BA|A|1936
4W29|1|BA|A|1937
4W29|1|BA|A|1938
4W29|1|BA|U|1939
4W29|1|BA|U|1940
4W29|1|BA|C|1941
4W29|1|BA|C|1942
4W29|1|BA|U|1943
4W29|1|BA|U|1944
4W29|1|BA|G|1945
*
4W29|1|BA|C|1961
4W29|1|BA|C|1962
4W29|1|BA|U|1963
4W29|1|BA|G|1964

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AX

Transfer RNA; tRNA

Chain BD

50S ribosomal protein L2