IL_4W29_413

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GU*GAC

Length

5 nucleotides

Bulged bases

4W29|1|CA|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_413 not in the Motif Atlas

Homologous match to IL_4LFB_002

Geometric discrepancy: 0.2661

The information below is about IL_4LFB_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

4W29|1|CA|G|44
4W29|1|CA|U|45
*
4W29|1|CA|G|396
4W29|1|CA|A|397
4W29|1|CA|C|398

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CY

Elongation factor G