IL_4W29_418

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

4W29|1|CA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_418 not in the Motif Atlas

Homologous match to IL_6CZR_154

Geometric discrepancy: 0.2866

The information below is about IL_6CZR_154

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76319.3

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

4W29|1|CA|U|1052
4W29|1|CA|G|1053
4W29|1|CA|C|1054
4W29|1|CA|A|1055
4W29|1|CA|U|1056
*
4W29|1|CA|A|1204
4W29|1|CA|U|1205
4W29|1|CA|G|1206

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14 type Z

Chain CV

mRNA

Chain CX

Transfer RNA; tRNA

Chain CY

Elongation factor G