3D structure

PDB id
4W29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
UGCAU*AUG
Length
8 nucleotides
Bulged bases
4W29|1|CA|C|1054
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W29_418 not in the Motif Atlas
Homologous match to IL_6CZR_154
Geometric discrepancy: 0.2866
The information below is about IL_6CZR_154
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_76319.3
Basepair signature
cWW-L-cWS-cWW
Number of instances in this motif group
4

Unit IDs

4W29|1|CA|U|1052
4W29|1|CA|G|1053
4W29|1|CA|C|1054
4W29|1|CA|A|1055
4W29|1|CA|U|1056
*
4W29|1|CA|A|1204
4W29|1|CA|U|1205
4W29|1|CA|G|1206

Current chains

Chain CA
16S Ribosomal RNA

Nearby chains

Chain CC
30S ribosomal protein S3
Chain CJ
30S ribosomal protein S10
Chain CN
30S ribosomal protein S14 type Z
Chain CV
mRNA
Chain CX
Transfer RNA; tRNA
Chain CY
Elongation factor G

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0935 s