IL_4W2E_042

3D structure

PDB id

4W2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCG,CGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2E_042 not in the Motif Atlas

Homologous match to IL_4WF9_042

Geometric discrepancy: 0.2593

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4W2E|1|A|G|1037
4W2E|1|A|C|1038
4W2E|1|A|G|1039
*
4W2E|1|A|C|1116
4W2E|1|A|G|1117
4W2E|1|A|C|1118

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L6

Chain Q

50S ribosomal protein L16

Chain Z

50S ribosomal protein L25