IL_4W2E_089

3D structure

PDB id

4W2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2E_089 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.3942

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

4W2E|1|A|G|2110
4W2E|1|A|C|2111
4W2E|1|A|G|2112
4W2E|1|A|U|2113
4W2E|1|A|A|2114
4W2E|1|A|G|2115
4W2E|1|A|G|2116
4W2E|1|A|A|2117
4W2E|1|A|U|2118
4W2E|1|A|A|2119
4W2E|1|A|G|2120
4W2E|1|A|G|2121
*
4W2E|1|A|C|2177
4W2E|1|A|C|2178
4W2E|1|A|C|2179

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain x

Transfer RNA; tRNA