IL_4W2E_090

3D structure

PDB id

4W2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

4W2E|1|A|A|2169

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2E_090 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.4467

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

4W2E|1|A|G|2124
4W2E|1|A|G|2125
4W2E|1|A|A|2126
4W2E|1|A|G|2127
*
4W2E|1|A|C|2161
4W2E|1|A|G|2162
4W2E|1|A|C|2163
4W2E|1|A|C|2164
4W2E|1|A|G|2165
4W2E|1|A|G|2166
4W2E|1|A|U|2167
4W2E|1|A|G|2168
4W2E|1|A|A|2169
4W2E|1|A|A|2170
4W2E|1|A|A|2171
4W2E|1|A|U|2172
4W2E|1|A|A|2173
4W2E|1|A|C|2174

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain x

Transfer RNA; tRNA