IL_4W2E_145

3D structure

PDB id

4W2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

4W2E|1|a|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2E_145 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.071

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

4W2E|1|a|C|569
4W2E|1|a|G|570
4W2E|1|a|U|571
4W2E|1|a|A|572
4W2E|1|a|A|573
4W2E|1|a|A|574
4W2E|1|a|G|575
*
4W2E|1|a|C|880
4W2E|1|a|G|881

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S5

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17