IL_4W2F_040

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_040 not in the Motif Atlas

Geometric match to IL_6CZR_151

Geometric discrepancy: 0.1866

The information below is about IL_6CZR_151

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

4W2F|1|AA|G|993
4W2F|1|AA|A|994
4W2F|1|AA|C|995
4W2F|1|AA|A|996
4W2F|1|AA|U|997
*
4W2F|1|AA|A|1044
4W2F|1|AA|C|1045

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AN

30S Ribosomal Protein S14