IL_4W2F_048
3D structure
- PDB id
- 4W2F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GUUG*CACUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4W2F_048 not in the Motif Atlas
- Geometric match to IL_6CZR_158
- Geometric discrepancy: 0.2208
- The information below is about IL_6CZR_158
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- Minor groove platform
- Motif group
- IL_40144.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
4W2F|1|AA|G|1124
4W2F|1|AA|U|1125
4W2F|1|AA|U|1126
4W2F|1|AA|G|1127
*
4W2F|1|AA|C|1145
4W2F|1|AA|A|1146
4W2F|1|AA|C|1147
4W2F|1|AA|U|1148
4W2F|1|AA|C|1149
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AI
- 30S Ribosomal Protein S9
- Chain AJ
- 30S Ribosomal Protein S10
Coloring options: