3D structure

PDB id
4W2F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
CGAAU*AUAG
Length
9 nucleotides
Bulged bases
4W2F|1|BA|A|307
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W2F_076 not in the Motif Atlas
Homologous match to IL_7RQB_011
Geometric discrepancy: 0.0619
The information below is about IL_7RQB_011
Detailed Annotation
tSH-tHW
Broad Annotation
No text annotation
Motif group
IL_04059.1
Basepair signature
cWW-tWH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

4W2F|1|BA|C|304
4W2F|1|BA|G|305
4W2F|1|BA|A|306
4W2F|1|BA|A|307
4W2F|1|BA|U|308
*
4W2F|1|BA|A|381
4W2F|1|BA|U|382
4W2F|1|BA|A|383
4W2F|1|BA|G|384

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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