IL_4W2F_120

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

4W2F|1|BA|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_120 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.0444

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4W2F|1|BA|C|1483
4W2F|1|BA|U|1484
4W2F|1|BA|A|1485
4W2F|1|BA|G|1486
*
4W2F|1|BA|C|1598
4W2F|1|BA|G|1599
4W2F|1|BA|A|1600
4W2F|1|BA|A|1601
4W2F|1|BA|G|1602

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains