IL_4W2F_130

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4W2F|1|BA|G|2014

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_130 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.0423

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4W2F|1|BA|A|1716
4W2F|1|BA|C|1717
4W2F|1|BA|U|1718
4W2F|1|BA|C|1719
4W2F|1|BA|U|1720
4W2F|1|BA|G|1721
*
4W2F|1|BA|C|2012
4W2F|1|BA|U|2013
4W2F|1|BA|G|2014
4W2F|1|BA|U|2015

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BE

50S Ribosomal Protein L3

Chain BO

50S Ribosomal Protein L14