IL_4W2F_137

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_137 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.0915

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4W2F|1|BA|U|1882
4W2F|1|BA|C|1883
4W2F|1|BA|A|1884
4W2F|1|BA|A|1885
4W2F|1|BA|G|1886
*
4W2F|1|BA|C|1909
4W2F|1|BA|G|1910
4W2F|1|BA|A|1911
4W2F|1|BA|A|1912
4W2F|1|BA|G|1913

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AY

Transfer RNA; tRNA