IL_4W2F_148

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_148 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.2236

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4W2F|1|BA|G|2132
4W2F|1|BA|C|2133
4W2F|1|BA|G|2134
4W2F|1|BA|U|2135
4W2F|1|BA|A|2136
4W2F|1|BA|G|2137
4W2F|1|BA|G|2138
4W2F|1|BA|A|2139
4W2F|1|BA|U|2140
4W2F|1|BA|A|2141
4W2F|1|BA|G|2142
*
4W2F|1|BA|C|2200
4W2F|1|BA|C|2201

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AY

Transfer RNA; tRNA