IL_4W2F_165

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4W2F|1|BA|G|2793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_165 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0349

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4W2F|1|BA|U|2648
4W2F|1|BA|U|2649
4W2F|1|BA|G|2650
4W2F|1|BA|A|2651
4W2F|1|BA|G|2652
*
4W2F|1|BA|C|2787
4W2F|1|BA|A|2788
4W2F|1|BA|A|2789
4W2F|1|BA|G|2790
4W2F|1|BA|A|2791
4W2F|1|BA|U|2792
4W2F|1|BA|G|2793
4W2F|1|BA|A|2794
4W2F|1|BA|G|2795

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BE

50S Ribosomal Protein L3

Chain BN

50S Ribosomal Protein L13