3D structure

PDB id
4W2F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
GACAAC*GCUAAUC
Length
13 nucleotides
Bulged bases
4W2F|1|CA|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W2F_187 not in the Motif Atlas
Homologous match to IL_4LFB_009
Geometric discrepancy: 0.077
The information below is about IL_4LFB_009
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_12745.1
Basepair signature
cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
1

Unit IDs

4W2F|1|CA|G|148
4W2F|1|CA|A|149
4W2F|1|CA|C|150
4W2F|1|CA|A|151
4W2F|1|CA|A|152
4W2F|1|CA|C|153
*
4W2F|1|CA|G|168
4W2F|1|CA|C|169
4W2F|1|CA|U|170
4W2F|1|CA|A|171
4W2F|1|CA|A|172
4W2F|1|CA|U|173
4W2F|1|CA|C|174

Current chains

Chain CA
16S Ribosomal RNA

Nearby chains

Chain CT
30S Ribosomal Protein S20

Coloring options:


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