IL_4W2F_233

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4W2F|1|CA|C|1400, 4W2F|1|CA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_233 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.0633

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4W2F|1|CA|C|1399
4W2F|1|CA|C|1400
4W2F|1|CA|G|1401
*
4W2F|1|CA|C|1501
4W2F|1|CA|A|1502
4W2F|1|CA|A|1503
4W2F|1|CA|G|1504

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CV

mRNA

Chain CX

Transfer RNA; tRNA