IL_4W2F_234

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_234 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.0876

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4W2F|1|CA|G|1401
4W2F|1|CA|C|1402
4W2F|1|CA|C|1403
4W2F|1|CA|C|1404
*
4W2F|1|CA|G|1497
4W2F|1|CA|U|1498
4W2F|1|CA|A|1499
4W2F|1|CA|A|1500
4W2F|1|CA|C|1501

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CV

mRNA

Chain CX

Transfer RNA; tRNA

Chain DA

Large subunit ribosomal RNA; LSU rRNA