IL_4W2F_253

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

4W2F|1|DA|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_253 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.1118

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4W2F|1|DA|C|280
4W2F|1|DA|G|281
4W2F|1|DA|A|282
4W2F|1|DA|A|283
4W2F|1|DA|U|284
*
4W2F|1|DA|A|357
4W2F|1|DA|U|358
4W2F|1|DA|A|359
4W2F|1|DA|G|360

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains