IL_4W2F_263

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_263 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0512

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4W2F|1|DA|U|703
4W2F|1|DA|G|704
4W2F|1|DA|A|705
4W2F|1|DA|A|706
4W2F|1|DA|G|707
*
4W2F|1|DA|U|724
4W2F|1|DA|G|725
4W2F|1|DA|G|726
4W2F|1|DA|A|727
4W2F|1|DA|G|728

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DD

50S Ribosomal Protein L2