IL_4W2F_293

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_293 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.108

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4W2F|1|DA|C|1417
4W2F|1|DA|G|1418
4W2F|1|DA|A|1419
4W2F|1|DA|U|1420
4W2F|1|DA|G|1421
*
4W2F|1|DA|C|1577
4W2F|1|DA|U|1578
4W2F|1|DA|A|1579
4W2F|1|DA|A|1580
4W2F|1|DA|G|1581

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains