3D structure

PDB id
4W2F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
CGAAAUUCCUUG*CCUG
Length
16 nucleotides
Bulged bases
4W2F|1|DA|A|1938, 4W2F|1|DA|U|1944, 4W2F|1|DA|U|1963
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W2F_315 not in the Motif Atlas
Homologous match to IL_4WF9_077
Geometric discrepancy: 0.1165
The information below is about IL_4WF9_077
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42218.2
Basepair signature
cWW-L-R-cHW-cWW-L-L-L-R-L
Number of instances in this motif group
5

Unit IDs

4W2F|1|DA|C|1934
4W2F|1|DA|G|1935
4W2F|1|DA|A|1936
4W2F|1|DA|A|1937
4W2F|1|DA|A|1938
4W2F|1|DA|U|1939
4W2F|1|DA|U|1940
4W2F|1|DA|C|1941
4W2F|1|DA|C|1942
4W2F|1|DA|U|1943
4W2F|1|DA|U|1944
4W2F|1|DA|G|1945
*
4W2F|1|DA|C|1961
4W2F|1|DA|C|1962
4W2F|1|DA|U|1963
4W2F|1|DA|G|1964

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain CA
Small subunit ribosomal RNA; SSU rRNA
Chain CW
Transfer RNA; tRNA
Chain DD
50S Ribosomal Protein L2

Coloring options:


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