IL_4W2F_356

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4W2F|1|BA|G|977

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_356 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.0868

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4W2F|1|BA|C|891
4W2F|1|BA|G|892
4W2F|1|BA|C|893
4W2F|1|BA|U|894
4W2F|1|BA|G|895
4W2F|1|BA|A|896
4W2F|1|BA|C|897
*
4W2F|1|BA|G|973
4W2F|1|BA|G|974
4W2F|1|BA|U|975
4W2F|1|BA|G|976
4W2F|1|BA|G|977
4W2F|1|BA|A|978
4W2F|1|BA|G|979

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B3

50S Ribosomal Protein L30