IL_4W2F_357

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_357 not in the Motif Atlas

Homologous match to IL_9DFE_026

Geometric discrepancy: 0.0675

The information below is about IL_9DFE_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4W2F|1|BA|U|905
4W2F|1|BA|G|906
4W2F|1|BA|U|907
4W2F|1|BA|A|908
4W2F|1|BA|G|909
*
4W2F|1|BA|C|961
4W2F|1|BA|G|962
4W2F|1|BA|A|963
4W2F|1|BA|A|964
4W2F|1|BA|G|965

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B0

50S Ribosomal Protein L27

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BQ

50S Ribosomal Protein L16