IL_4W2F_367

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4W2F|1|BA|U|2154

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_367 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.3784

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4W2F|1|BA|C|2151
4W2F|1|BA|U|2152
4W2F|1|BA|G|2153
4W2F|1|BA|U|2154
4W2F|1|BA|G|2155
4W2F|1|BA|A|2156
4W2F|1|BA|A|2157
4W2F|1|BA|C|2158
*
4W2F|1|BA|G|2177
4W2F|1|BA|G|2178
4W2F|1|BA|G|2179
4W2F|1|BA|A|2180
4W2F|1|BA|G|2181

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains